Last updated on 2021-04-10 20:49:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.0.1 | 123.92 | 375.45 | 499.37 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 4.0.1 | 92.02 | 277.93 | 369.95 | OK | |
| r-devel-linux-x86_64-fedora-clang | 4.0.1 | 683.94 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 4.0.1 | 658.33 | OK | |||
| r-devel-windows-ix86+x86_64 | 4.0.1 | 186.00 | 481.00 | 667.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 4.0.1 | NOTE | ||||
| r-patched-linux-x86_64 | 4.0.1 | 109.57 | 356.03 | 465.60 | OK | |
| r-patched-solaris-x86 | 4.0.1 | 716.20 | ERROR | |||
| r-release-linux-x86_64 | 4.0.1 | 110.01 | 357.94 | 467.95 | OK | |
| r-release-macos-x86_64 | 4.0.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 4.0.1 | 272.00 | 674.00 | 946.00 | OK | |
| r-oldrel-macos-x86_64 | 4.0.1 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 3.2.3 | 166.00 | 467.00 | 633.00 | NOTE |
Version: 4.0.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'SummarizedExperiment', 'SingleCellExperiment', 'MAST', 'DESeq2',
'rtracklayer'
Flavor: r-devel-linux-x86_64-debian-clang
Version: 4.0.1
Check: package dependencies
Result: NOTE
Imports includes 41 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 4.0.1
Check: installed package size
Result: NOTE
installed size is 10.1Mb
sub-directories of 1Mb or more:
R 1.2Mb
libs 8.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64
Version: 4.0.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'MAST', 'rtracklayer', 'monocle'
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 4.0.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘monocle’
Flavor: r-patched-solaris-x86
Version: 4.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [116s/141s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Seurat)
Attaching SeuratObject
>
> test_check("Seurat")
══ Skipped tests ═══════════════════════════════════════════════════════════════
● On CRAN (18)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_load_10X.R:34:1): (code run outside of `test_that()`) ───────────
Error: HDF5-API Errors:
error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
█
1. └─Seurat::Load10X_Spatial(data.dir = "../testdata/visium") test_load_10X.R:34:0
2. └─Seurat::Read10X_h5(...)
3. ├─infile[[paste0(genome, "/", feature_slot)]][]
4. └─hdf5r:::`[.H5D`(...)
5. └─x$read(...)
6. └─self$read_low_level(...)
[ FAIL 1 | WARN 0 | SKIP 18 | PASS 587 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 4.0.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'MAST', 'monocle'
Flavor: r-release-macos-x86_64
Version: 4.0.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'SingleCellExperiment', 'MAST', 'monocle'
Flavor: r-oldrel-macos-x86_64
Version: 4.0.1
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-oldrel-macos-x86_64
Version: 3.2.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'loomR'
Flavor: r-oldrel-windows-ix86+x86_64
Version: 3.2.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: 'loomR'
Flavor: r-oldrel-windows-ix86+x86_64