CRAN Package Check Results for Package TCIU

Last updated on 2020-11-28 20:48:01 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 33.96 441.30 475.26 OK
r-devel-linux-x86_64-debian-gcc 1.1.0 28.06 324.96 353.02 OK
r-devel-linux-x86_64-fedora-clang 1.1.0 569.01 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 573.99 OK
r-devel-windows-ix86+x86_64 1.1.0 64.00 545.00 609.00 NOTE
r-patched-linux-x86_64 1.1.0 35.85 421.16 457.01 OK
r-patched-solaris-x86 1.1.0 550.40 WARN
r-release-linux-x86_64 1.1.0 34.10 420.94 455.04 OK
r-release-macos-x86_64 1.1.0 WARN
r-release-windows-ix86+x86_64 1.1.0 56.00 436.00 492.00 NOTE
r-oldrel-macos-x86_64 1.1.0 WARN
r-oldrel-windows-ix86+x86_64 1.1.0 46.00 447.00 493.00 WARN

Check Details

Version: 1.1.0
Check: package dependencies
Result: NOTE
    Imports includes 25 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.0
Check: installed package size
Result: NOTE
     installed size is 12.4Mb
     sub-directories of 1Mb or more:
     doc 11.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: TCIU
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    Loading required package: cubature
    Loading required package: oro.nifti
    oro.nifti 0.11.0
    Loading required package: magrittr
    Loading required package: plotly
    Loading required package: ggplot2
    
    Attaching package: 'plotly'
    
    The following object is masked from 'package:ggplot2':
    
     last_plot
    
    The following object is masked from 'package:oro.nifti':
    
     slice
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following object is masked from 'package:graphics':
    
     layout
    
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshot43fa44a44814.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshot43fa44a44814.png': No such file or directory
    Quitting from lines 105-106 (tciu-LT-kimesurface.Rmd)
    Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘tciu-LT-kimesurface.Rmd’
    
    --- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: TCIU
    Loading required package: DT
    Loading required package: AnalyzeFMRI
    Loading required package: R.matlab
    R.matlab v3.6.2 (2018-09-26) successfully loaded. See ?R.matlab for help.
    
    Attaching package: 'R.matlab'
    
    The following objects are masked from 'package:base':
    
     getOption, isOpen
    
    Loading required package: fastICA
    Loading required package: tcltk
    Loading required package: tkrplot
    Warning: `arrange_()` is deprecated as of dplyr 0.7.0.
    Please use `arrange()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshot49a0155b115f.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshot49a0155b115f.png': No such file or directory
    Quitting from lines 133-134 (tciu-fMRI-analytics.Rmd)
    Error: processing vignette 'tciu-fMRI-analytics.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘tciu-fMRI-analytics.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘tciu-LT-kimesurface.Rmd’ ‘tciu-fMRI-analytics.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: TCIU
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    Loading required package: cubature
    Loading required package: oro.nifti
    oro.nifti 0.11.0
    Loading required package: magrittr
    Loading required package: plotly
    Loading required package: ggplot2
    
    Attaching package: 'plotly'
    
    The following object is masked from 'package:ggplot2':
    
     last_plot
    
    The following object is masked from 'package:oro.nifti':
    
     slice
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following object is masked from 'package:graphics':
    
     layout
    
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshot95c8743f670b.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshot95c8743f670b.png': No such file or directory
    Quitting from lines 105-106 (tciu-LT-kimesurface.Rmd)
    Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘tciu-LT-kimesurface.Rmd’
    
    --- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: TCIU
    Loading required package: DT
    Loading required package: AnalyzeFMRI
    Loading required package: R.matlab
    R.matlab v3.6.2 (2018-09-26) successfully loaded. See ?R.matlab for help.
    
    Attaching package: 'R.matlab'
    
    The following objects are masked from 'package:base':
    
     getOption, isOpen
    
    Loading required package: fastICA
    Loading required package: tcltk
    Loading required package: tkrplot
    Warning: `arrange_()` is deprecated as of dplyr 0.7.0.
    Please use `arrange()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshot95d8593eb67.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshot95d8593eb67.png': No such file or directory
    Quitting from lines 133-134 (tciu-fMRI-analytics.Rmd)
    Error: processing vignette 'tciu-fMRI-analytics.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘tciu-fMRI-analytics.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘tciu-LT-kimesurface.Rmd’ ‘tciu-fMRI-analytics.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 1.1.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: loading Rplot failed
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: dependencies in R code
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: S3 generic/method consistency
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: replacement functions
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: foreign function calls
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: for missing documentation entries
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: for code/documentation mismatches
Result: WARN
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: Rd \usage sections
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: TCIU
    No protocol specified
    No protocol specified
    Warning in fun(libname, pkgname) : couldn't connect to display ":0"
    No protocol specified
    No protocol specified
    Warning: loading Rplot failed
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    Loading required package: cubature
    Loading required package: oro.nifti
    oro.nifti 0.11.0
    Loading required package: magrittr
    Loading required package: plotly
    Loading required package: ggplot2
    
    Attaching package: 'plotly'
    
    The following object is masked from 'package:ggplot2':
    
     last_plot
    
    The following object is masked from 'package:oro.nifti':
    
     slice
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following object is masked from 'package:graphics':
    
     layout
    
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshotae3f605092ef.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshotae3f605092ef.png': No such file or directory
    Quitting from lines 105-106 (tciu-LT-kimesurface.Rmd)
    Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘tciu-LT-kimesurface.Rmd’
    
    --- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: TCIU
    No protocol specified
    No protocol specified
    Warning in fun(libname, pkgname) : couldn't connect to display ":0"
    No protocol specified
    No protocol specified
    Warning: loading Rplot failed
    Loading required package: DT
    Loading required package: AnalyzeFMRI
    Loading required package: R.matlab
    R.matlab v3.6.2 (2018-09-26) successfully loaded. See ?R.matlab for help.
    
    Attaching package: 'R.matlab'
    
    The following objects are masked from 'package:base':
    
     getOption, isOpen
    
    Loading required package: fastICA
    Loading required package: tcltk
    Loading required package: tkrplot
    Warning: `arrange_()` is deprecated as of dplyr 0.7.0.
    Please use `arrange()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="webshotae4f25a48f0d.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshotae4f25a48f0d.png': No such file or directory
    Quitting from lines 133-134 (tciu-fMRI-analytics.Rmd)
    Error: processing vignette 'tciu-fMRI-analytics.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘tciu-fMRI-analytics.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘tciu-LT-kimesurface.Rmd’ ‘tciu-fMRI-analytics.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'tciu-LT-kimesurface.Rmd' using rmarkdown
    Loading required package: TCIU
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    Loading required package: cubature
    Loading required package: oro.nifti
    oro.nifti 0.11.0
    Loading required package: magrittr
    Loading required package: plotly
    Loading required package: ggplot2
    
    Attaching package: 'plotly'
    
    The following object is masked from 'package:ggplot2':
    
     last_plot
    
    The following object is masked from 'package:oro.nifti':
    
     slice
    
    The following object is masked from 'package:stats':
    
     filter
    
    The following object is masked from 'package:graphics':
    
     layout
    
    Quitting from lines 159-160 (tciu-LT-kimesurface.Rmd)
    Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics:
    Invalid unit
    --- failed re-building 'tciu-LT-kimesurface.Rmd'
    
    --- re-building 'tciu-fMRI-analytics.Rmd' using rmarkdown
    Loading required package: TCIU
    Loading required package: DT
    Loading required package: AnalyzeFMRI
    Loading required package: R.matlab
    R.matlab v3.6.2 (2018-09-26) successfully loaded. See ?R.matlab for help.
    
    Attaching package: 'R.matlab'
    
    The following objects are masked from 'package:base':
    
     getOption, isOpen
    
    Loading required package: fastICA
    Loading required package: tcltk
    Loading required package: tkrplot
    Warning: `arrange_()` is deprecated as of dplyr 0.7.0.
    Please use `arrange()` instead.
    See vignette('programming') for more help
    This warning is displayed once every 8 hours.
    Call `lifecycle::last_warnings()` to see where this warning was generated.
    Warning: 'contour' objects don't have these attributes: 'yintercept'
    Valid attributes include:
    'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'ids', 'customdata', 'meta', 'hoverinfo', 'hoverlabel', 'stream', 'transforms', 'uirevision', 'z', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'hovertext', 'transpose', 'xtype', 'ytype', 'zhoverformat', 'hovertemplate', 'hoverongaps', 'connectgaps', 'fillcolor', 'autocontour', 'ncontours', 'contours', 'line', 'zauto', 'zmin', 'zmax', 'zmid', 'colorscale', 'autocolorscale', 'reversescale', 'showscale', 'colorbar', 'coloraxis', 'xcalendar', 'ycalendar', 'xaxis', 'yaxis', 'idssrc', 'customdatasrc', 'metasrc', 'hoverinfosrc', 'zsrc', 'xsrc', 'ysrc', 'textsrc', 'hovertextsrc', 'hovertemplatesrc', 'key', 'set', 'frame', 'transforms', '_isNestedKey', '_isSimpleKey', '_isGraticule', '_bbox'
    
    Warning: 'contour' objects don't have these attributes: 'yintercept'
    Valid attributes include:
    'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'ids', 'customdata', 'meta', 'hoverinfo', 'hoverlabel', 'stream', 'transforms', 'uirevision', 'z', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'hovertext', 'transpose', 'xtype', 'ytype', 'zhoverformat', 'hovertemplate', 'hoverongaps', 'connectgaps', 'fillcolor', 'autocontour', 'ncontours', 'contours', 'line', 'zauto', 'zmin', 'zmax', 'zmid', 'colorscale', 'autocolorscale', 'reversescale', 'showscale', 'colorbar', 'coloraxis', 'xcalendar', 'ycalendar', 'xaxis', 'yaxis', 'idssrc', 'customdatasrc', 'metasrc', 'hoverinfosrc', 'zsrc', 'xsrc', 'ysrc', 'textsrc', 'hovertextsrc', 'hovertemplatesrc', 'key', 'set', 'frame', 'transforms', '_isNestedKey', '_isSimpleKey', '_isGraticule', '_bbox'
    
    Warning: 'contour' objects don't have these attributes: 'yintercept'
    Valid attributes include:
    'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'ids', 'customdata', 'meta', 'hoverinfo', 'hoverlabel', 'stream', 'transforms', 'uirevision', 'z', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'hovertext', 'transpose', 'xtype', 'ytype', 'zhoverformat', 'hovertemplate', 'hoverongaps', 'connectgaps', 'fillcolor', 'autocontour', 'ncontours', 'contours', 'line', 'zauto', 'zmin', 'zmax', 'zmid', 'colorscale', 'autocolorscale', 'reversescale', 'showscale', 'colorbar', 'coloraxis', 'xcalendar', 'ycalendar', 'xaxis', 'yaxis', 'idssrc', 'customdatasrc', 'metasrc', 'hoverinfosrc', 'zsrc', 'xsrc', 'ysrc', 'textsrc', 'hovertextsrc', 'hovertemplatesrc', 'key', 'set', 'frame', 'transforms', '_isNestedKey', '_isSimpleKey', '_isGraticule', '_bbox'
    
    Warning: Can only have one: config
    Warning: 'contour' objects don't have these attributes: 'yintercept'
    Valid attributes include:
    'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'ids', 'customdata', 'meta', 'hoverinfo', 'hoverlabel', 'stream', 'transforms', 'uirevision', 'z', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'hovertext', 'transpose', 'xtype', 'ytype', 'zhoverformat', 'hovertemplate', 'hoverongaps', 'connectgaps', 'fillcolor', 'autocontour', 'ncontours', 'contours', 'line', 'zauto', 'zmin', 'zmax', 'zmid', 'colorscale', 'autocolorscale', 'reversescale', 'showscale', 'colorbar', 'coloraxis', 'xcalendar', 'ycalendar', 'xaxis', 'yaxis', 'idssrc', 'customdatasrc', 'metasrc', 'hoverinfosrc', 'zsrc', 'xsrc', 'ysrc', 'textsrc', 'hovertextsrc', 'hovertemplatesrc', 'key', 'set', 'frame', 'transforms', '_isNestedKey', '_isSimpleKey', '_isGraticule', '_bbox'
    
    Warning: 'contour' objects don't have these attributes: 'yintercept'
    Valid attributes include:
    'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'ids', 'customdata', 'meta', 'hoverinfo', 'hoverlabel', 'stream', 'transforms', 'uirevision', 'z', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'hovertext', 'transpose', 'xtype', 'ytype', 'zhoverformat', 'hovertemplate', 'hoverongaps', 'connectgaps', 'fillcolor', 'autocontour', 'ncontours', 'contours', 'line', 'zauto', 'zmin', 'zmax', 'zmid', 'colorscale', 'autocolorscale', 'reversescale', 'showscale', 'colorbar', 'coloraxis', 'xcalendar', 'ycalendar', 'xaxis', 'yaxis', 'idssrc', 'customdatasrc', 'metasrc', 'hoverinfosrc', 'zsrc', 'xsrc', 'ysrc', 'textsrc', 'hovertextsrc', 'hovertemplatesrc', 'key', 'set', 'frame', 'transforms', '_isNestedKey', '_isSimpleKey', '_isGraticule', '_bbox'
    
    Warning: 'contour' objects don't have these attributes: 'yintercept'
    Valid attributes include:
    'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'ids', 'customdata', 'meta', 'hoverinfo', 'hoverlabel', 'stream', 'transforms', 'uirevision', 'z', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'hovertext', 'transpose', 'xtype', 'ytype', 'zhoverformat', 'hovertemplate', 'hoverongaps', 'connectgaps', 'fillcolor', 'autocontour', 'ncontours', 'contours', 'line', 'zauto', 'zmin', 'zmax', 'zmid', 'colorscale', 'autocolorscale', 'reversescale', 'showscale', 'colorbar', 'coloraxis', 'xcalendar', 'ycalendar', 'xaxis', 'yaxis', 'idssrc', 'customdatasrc', 'metasrc', 'hoverinfosrc', 'zsrc', 'xsrc', 'ysrc', 'textsrc', 'hovertextsrc', 'hovertemplatesrc', 'key', 'set', 'frame', 'transforms', '_isNestedKey', '_isSimpleKey', '_isGraticule', '_bbox'
    
    --- finished re-building 'tciu-fMRI-analytics.Rmd'
    
    SUMMARY: processing the following file failed:
     'tciu-LT-kimesurface.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64