CRAN Package Check Results for Maintainer ‘Martin Petr <contact at bodkan.net>’

Last updated on 2020-12-01 23:48:52 CET.

Package WARN OK
admixr 1 11

Package admixr

Current CRAN status: WARN: 1, OK: 11

Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘qpAdm.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    ADMIXTOOLS programs required by admixr are not in your $PATH variable.
    At the very least, the following programs should be available:
     qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
    Make sure to modify the $PATH variable in your .Renviron file so
    that it points to the directory containing the ADMIXTOOLS programs.
    
    Quitting from lines 131-134 (qpAdm.Rmd)
    Error: processing vignette 'qpAdm.Rmd' failed with diagnostics:
    'wget' call had nonzero exit status
    --- failed re-building ‘qpAdm.Rmd’
    
    --- re-building ‘tutorial.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    ADMIXTOOLS programs required by admixr are not in your $PATH variable.
    At the very least, the following programs should be available:
     qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
    Make sure to modify the $PATH variable in your .Renviron file so
    that it points to the directory containing the ADMIXTOOLS programs.
    
    ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
    ✔ ggplot2 3.3.2 ✔ purrr 0.3.4
    ✔ tibble 3.0.4 ✔ dplyr 1.0.2
    ✔ tidyr 1.1.2 ✔ stringr 1.4.0
    ✔ readr 1.4.0 ✔ forcats 0.5.0
    ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
    ✖ dplyr::filter() masks stats::filter()
    ✖ dplyr::lag() masks stats::lag()
    Quitting from lines 132-133 (tutorial.Rmd)
    Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
    'wget' call had nonzero exit status
    --- failed re-building ‘tutorial.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘qpAdm.Rmd’ ‘tutorial.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86