CRAN Package Check Results for Package data.table

Last updated on 2019-12-14 20:46:27 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.12.8 40.09 562.12 602.21 OK
r-devel-linux-x86_64-debian-gcc 1.12.8 24.11 774.82 798.93 OK
r-devel-linux-x86_64-fedora-clang 1.12.8 601.04 OK
r-devel-linux-x86_64-fedora-gcc 1.12.8 659.86 OK
r-devel-windows-ix86+x86_64 1.12.8 135.00 586.00 721.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.12.8 104.00 452.00 556.00 OK
r-patched-linux-x86_64 1.12.8 32.01 593.75 625.76 OK
r-patched-solaris-x86 1.12.8 421.30 ERROR
r-release-linux-x86_64 1.12.8 32.85 592.21 625.06 OK
r-release-windows-ix86+x86_64 1.12.8 128.00 701.00 829.00 OK
r-release-osx-x86_64 1.12.8 OK
r-oldrel-windows-ix86+x86_64 1.12.8 156.00 539.00 695.00 OK
r-oldrel-osx-x86_64 1.12.8 OK

Check Details

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [35s/38s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [58s/66s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Test 1658.421 produced 1 errors but expected 0
     Expected:
     Observed: zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.
     Output captured before unexpected warning/error/message:
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     No list columns are present. Setting sep2='' otherwise quote='auto' would quote fields containing sep2.
     Column writers: 3 3
     args.doRowNames=0 args.rowNames=0 doQuote=-128 args.nrow=200 args.ncol=2 eolLen=1
     maxLineLen=51. Found in 0.000s
     Writing bom (false), yaml (0 characters) and column names (true) ... deflate input stream: e15b240 39 afdc2f8 4
     deflate returned 1 with stream->total_out==24; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     done in 0.000s
     Writing 200 rows in 1 batches of 200 rows (each buffer size 8MB, showProgress=0, nth=1)
     deflate input stream: d259448 8391193 f9f9fd8 800
     deflate returned -2 with stream->total_out==0; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     <simpleError in fwrite(DT, file = f1 <- tempfile(fileext = ".gz"), verbose = TRUE): zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.>
     Test 1658.43 ran without errors but failed check that x equals y:
     > x = fread(f1)
     Empty data.table (0 rows and 2 cols): a,b
     [Key= Types=log,log Classes=log,log]
     > y = DT
     a b [Key= Types=int,int Classes=int,int]
     1: 1 1
     2: 1 1
     ---
     199: 2 4
     200: 2 4
     Different number of rows
     Error in fwrite(DT, file = f3 <- tempfile(), compress = "gzip") :
     zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please retry fwrite() with verbose=TRUE and include the full output with your data.table bug report.
     Error in test.data.table() :
     Failed after test 1658.43 before the next test() call in /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Execution halted
Flavor: r-patched-solaris-x86