CRAN Package Check Results for Maintainer ‘Emmanuel Paradis <Emmanuel.Paradis at ird.fr>’

Last updated on 2020-12-04 00:48:48 CET.

Package NOTE OK
ape 1 11
coalescentMCMC 12
distory 12
pegas 1 11

Package ape

Current CRAN status: NOTE: 1, OK: 11

Additional issues

valgrind

Version: 5.4-1
Check: Rd cross-references
Result: NOTE
    Undeclared packages ‘phangorn’, ‘ade4’, ‘pegas’, ‘geiger’, ‘apTreeshape’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Package coalescentMCMC

Current CRAN status: NOTE: 12

Version: 0.4-1
Check: R code for possible problems
Result: NOTE
    coalescentMCMC: no visible global function definition for
     'packageVersion'
    coalescentMCMC : getparams: no visible global function definition for
     'nlminb'
    sim.coalescent: no visible global function definition for 'segments'
    sim.coalescent: no visible global function definition for 'points'
    Undefined global functions or variables:
     nlminb packageVersion points segments
    Consider adding
     importFrom("graphics", "points", "segments")
     importFrom("stats", "nlminb")
     importFrom("utils", "packageVersion")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 0.4-1
Check: R code for possible problems
Result: NOTE
    coalescentMCMC: no visible global function definition for
     ‘packageVersion’
    coalescentMCMC : getparams: no visible global function definition for
     ‘nlminb’
    sim.coalescent: no visible global function definition for ‘plot’
    sim.coalescent: no visible global function definition for ‘segments’
    sim.coalescent: no visible global function definition for ‘points’
    Undefined global functions or variables:
     nlminb packageVersion plot points segments
    Consider adding
     importFrom("graphics", "plot", "points", "segments")
     importFrom("stats", "nlminb")
     importFrom("utils", "packageVersion")
    to your NAMESPACE file.
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package distory

Current CRAN status: OK: 12

Package pegas

Current CRAN status: NOTE: 1, OK: 11

Version: 0.14
Check: Rd cross-references
Result: NOTE
    Undeclared packages ‘ade4’, ‘vegan’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang