CRAN Package Check Results for Package lcmm

Last updated on 2021-12-08 21:51:01 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.9.3 114.22 419.67 533.89 ERROR
r-devel-linux-x86_64-debian-gcc 1.9.3 97.52 292.51 390.03 ERROR
r-devel-linux-x86_64-fedora-clang 1.9.3 683.97 ERROR
r-devel-linux-x86_64-fedora-gcc 1.9.3 684.05 ERROR
r-devel-windows-x86_64-new-UL 1.9.3 168.00 501.00 669.00 ERROR
r-devel-windows-x86_64-new-TK 1.9.3 ERROR
r-devel-windows-x86_64-old 1.9.3 165.00 403.00 568.00 ERROR
r-patched-linux-x86_64 1.9.3 110.29 425.21 535.50 OK
r-release-linux-x86_64 1.9.3 108.08 428.27 536.35 OK
r-release-macos-arm64 1.9.3 NOTE
r-release-macos-x86_64 1.9.3 OK
r-release-windows-ix86+x86_64 1.9.3 166.00 567.00 733.00 NOTE
r-oldrel-macos-x86_64 1.9.3 OK
r-oldrel-windows-ix86+x86_64 1.9.3 253.00 554.00 807.00 NOTE

Check Details

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in 'lcmm-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 2.01 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in ‘lcmm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 1.88 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in ‘lcmm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 7.03 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in ‘lcmm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 5.13 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in 'lcmm-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 3.03 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-windows-x86_64-new-UL

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in 'lcmm-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 2.16 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in 'lcmm-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 1.98 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-windows-x86_64-old

Version: 1.9.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'introduction.Rmd' using rmarkdown
    --- finished re-building 'introduction.Rmd'
    
    --- re-building 'latent_class_model_with_hlme.Rmd' using rmarkdown
    Quitting from lines 133-135 (latent_class_model_with_hlme.Rmd)
    Error: processing vignette 'latent_class_model_with_hlme.Rmd' failed with diagnostics:
    Vector B should be of length 15
    --- failed re-building 'latent_class_model_with_hlme.Rmd'
    
    --- re-building 'latent_process_model_with_lcmm.Rmd' using rmarkdown
    --- finished re-building 'latent_process_model_with_lcmm.Rmd'
    
    --- re-building 'latent_process_model_with_multlcmm.Rmd' using rmarkdown
    --- finished re-building 'latent_process_model_with_multlcmm.Rmd'
    
    --- re-building 'pre_normalizing.Rmd' using rmarkdown
    --- finished re-building 'pre_normalizing.Rmd'
    
    --- re-building 'usual_problems.Rmd' using rmarkdown
    Quitting from lines 109-113 (usual_problems.Rmd)
    Error: processing vignette 'usual_problems.Rmd' failed with diagnostics:
    Vector B should be of length 10
    --- failed re-building 'usual_problems.Rmd'
    
    SUMMARY: processing the following files failed:
     'latent_class_model_with_hlme.Rmd' 'usual_problems.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-old

Version: 1.9.3
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     R 2.0Mb
     doc 1.0Mb
     libs 1.7Mb
Flavors: r-release-macos-arm64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64