CRAN Package Check Results for Maintainer ‘Marek Gagolewski <marek at gagolewski.com>’

Last updated on 2020-12-04 01:51:36 CET.

Package ERROR WARN NOTE OK
agop 12
genie 12
genieclust 9 3
stringi 1 1 5 5

Package agop

Current CRAN status: OK: 12

Package genie

Current CRAN status: OK: 12

Package genieclust

Current CRAN status: ERROR: 9, OK: 3

Version: 0.9.4
Check: dependencies in R code
Result: WARN
    Missing or unexported object: 'emstreeR::mlpack_mst'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.9.4
Check: examples
Result: ERROR
    Running examples in 'genieclust-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: gclust
    > ### Title: The Genie++ Hierarchical Clustering Algorithm
    > ### Aliases: gclust gclust.default gclust.dist gclust.mst genie
    > ### genie.default genie.dist genie.mst
    >
    > ### ** Examples
    >
    > library("datasets")
    > data("iris")
    > X <- iris[1:4]
    > h <- gclust(X)
    > y_pred <- cutree(h, 3)
    > y_test <- iris[,5]
    > plot(iris[,2], iris[,3], col=y_pred,
    + pch=as.integer(iris[,5]), asp=1, las=1)
    > adjusted_rand_score(y_test, y_pred)
    [1] 0.8857921
    > pair_sets_index(y_test, y_pred)
    [1] 0.9049708
    >
    > # Fast for low-dimensional Euclidean spaces:
    > if (require("emstreeR")) h <- gclust(emst_mlpack(X))
    Loading required package: emstreeR
    Please, do not forget to appropriately cite 'emstreeR' when using it in an academic research. See citation(package = 'emstreeR').
    Error: 'mlpack_mst' is not an exported object from 'namespace:emstreeR'
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.9.4
Check: examples
Result: ERROR
    Running examples in ‘genieclust-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: gclust
    > ### Title: The Genie++ Hierarchical Clustering Algorithm
    > ### Aliases: gclust gclust.default gclust.dist gclust.mst genie
    > ### genie.default genie.dist genie.mst
    >
    > ### ** Examples
    >
    > library("datasets")
    > data("iris")
    > X <- iris[1:4]
    > h <- gclust(X)
    OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    > y_pred <- cutree(h, 3)
    > y_test <- iris[,5]
    > plot(iris[,2], iris[,3], col=y_pred,
    + pch=as.integer(iris[,5]), asp=1, las=1)
    > adjusted_rand_score(y_test, y_pred)
    [1] 0.8857921
    > pair_sets_index(y_test, y_pred)
    [1] 0.9049708
    >
    > # Fast for low-dimensional Euclidean spaces:
    > if (require("emstreeR")) h <- gclust(emst_mlpack(X))
    Loading required package: emstreeR
    Please, do not forget to appropriately cite 'emstreeR' when using it in an academic research. See citation(package = 'emstreeR').
    Error: 'mlpack_mst' is not an exported object from 'namespace:emstreeR'
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.9.4
Check: examples
Result: ERROR
    Running examples in ‘genieclust-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: gclust
    > ### Title: The Genie++ Hierarchical Clustering Algorithm
    > ### Aliases: gclust gclust.default gclust.dist gclust.mst genie
    > ### genie.default genie.dist genie.mst
    >
    > ### ** Examples
    >
    > library("datasets")
    > data("iris")
    > X <- iris[1:4]
    > h <- gclust(X)
    > y_pred <- cutree(h, 3)
    > y_test <- iris[,5]
    > plot(iris[,2], iris[,3], col=y_pred,
    + pch=as.integer(iris[,5]), asp=1, las=1)
    > adjusted_rand_score(y_test, y_pred)
    [1] 0.8857921
    > pair_sets_index(y_test, y_pred)
    [1] 0.9049708
    >
    > # Fast for low-dimensional Euclidean spaces:
    > if (require("emstreeR")) h <- gclust(emst_mlpack(X))
    Loading required package: emstreeR
    Please, do not forget to appropriately cite 'emstreeR' when using it in an academic research. See citation(package = 'emstreeR').
    Error: 'mlpack_mst' is not an exported object from 'namespace:emstreeR'
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 0.9.4
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'genieclust-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: gclust
    > ### Title: The Genie++ Hierarchical Clustering Algorithm
    > ### Aliases: gclust gclust.default gclust.dist gclust.mst genie
    > ### genie.default genie.dist genie.mst
    >
    > ### ** Examples
    >
    > library("datasets")
    > data("iris")
    > X <- iris[1:4]
    > h <- gclust(X)
    > y_pred <- cutree(h, 3)
    > y_test <- iris[,5]
    > plot(iris[,2], iris[,3], col=y_pred,
    + pch=as.integer(iris[,5]), asp=1, las=1)
    > adjusted_rand_score(y_test, y_pred)
    [1] 0.8857921
    > pair_sets_index(y_test, y_pred)
    [1] 0.9049708
    >
    > # Fast for low-dimensional Euclidean spaces:
    > if (require("emstreeR")) h <- gclust(emst_mlpack(X))
    Loading required package: emstreeR
    Please, do not forget to appropriately cite 'emstreeR' when using it in an academic research. See citation(package = 'emstreeR').
    Error: 'mlpack_mst' is not an exported object from 'namespace:emstreeR'
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.9.4
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'genieclust-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: gclust
    > ### Title: The Genie++ Hierarchical Clustering Algorithm
    > ### Aliases: gclust gclust.default gclust.dist gclust.mst genie
    > ### genie.default genie.dist genie.mst
    >
    > ### ** Examples
    >
    > library("datasets")
    > data("iris")
    > X <- iris[1:4]
    > h <- gclust(X)
    > y_pred <- cutree(h, 3)
    > y_test <- iris[,5]
    > plot(iris[,2], iris[,3], col=y_pred,
    + pch=as.integer(iris[,5]), asp=1, las=1)
    > adjusted_rand_score(y_test, y_pred)
    [1] 0.8857921
    > pair_sets_index(y_test, y_pred)
    [1] 0.9049708
    >
    > # Fast for low-dimensional Euclidean spaces:
    > if (require("emstreeR")) h <- gclust(emst_mlpack(X))
    Loading required package: emstreeR
    Please, do not forget to appropriately cite 'emstreeR' when using it in an academic research. See citation(package = 'emstreeR').
    Error: 'mlpack_mst' is not an exported object from 'namespace:emstreeR'
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.9.4
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: ‘emstreeR::mlpack_mst’
Flavors: r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Package stringi

Current CRAN status: ERROR: 1, WARN: 1, NOTE: 5, OK: 5

Additional issues

rchk valgrind

Version: 1.5.3
Check: installed package size
Result: NOTE
     installed size is 6.1Mb
     sub-directories of 1Mb or more:
     libs 5.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64

Version: 1.5.3
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     icu55/unicode/urename.h:979:48: warning: ‘int32_t uidna_toASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/common/uidna.cpp:513:85: warning: ‘int32_t uidna_toASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/common/uidna.cpp:526:80: warning: ‘int32_t uidna_toASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/unicode/urename.h:966:51: warning: ‘int32_t uidna_IDNToASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/common/uidna.cpp:876:87: warning: ‘int32_t uidna_IDNToASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/common/uidna.cpp:887:83: warning: ‘int32_t uidna_IDNToASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/common/uidna.cpp:891:85: warning: ‘int32_t uidna_IDNToASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/common/uidna.cpp:902:86: warning: ‘int32_t uidna_IDNToASCII_55_stringi(const UChar*, int32_t, UChar*, int32_t, int32_t, UParseError*, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/unicode/urename.h:758:54: warning: ‘uint32_t ucol_setVariableTop_55_stringi(UCollator*, const UChar*, int32_t, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/i18n/ucol_sit.cpp:543:92: warning: ‘uint32_t ucol_setVariableTop_55_stringi(UCollator*, const UChar*, int32_t, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/unicode/urename.h:749:58: warning: ‘void ucol_restoreVariableTop_55_stringi(UCollator*, uint32_t, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
     icu55/i18n/ucol_sit.cpp:545:71: warning: ‘void ucol_restoreVariableTop_55_stringi(UCollator*, uint32_t, UErrorCode*)’ is deprecated [-Wdeprecated-declarations]
Flavor: r-patched-solaris-x86

Version: 1.5.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-oldrel-windows-ix86+x86_64