CRAN Package Check Results for Package micompr

Last updated on 2022-01-25 19:50:37 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1 4.45 108.54 112.99 OK
r-devel-linux-x86_64-debian-gcc 1.1.1 2.95 83.06 86.01 OK
r-devel-linux-x86_64-fedora-clang 1.1.1 150.92 OK
r-devel-linux-x86_64-fedora-gcc 1.1.1 134.93 OK
r-devel-windows-x86_64-new-UL 1.1.1 140.00 164.00 304.00 OK
r-devel-windows-x86_64-new-TK 1.1.1 ERROR
r-patched-linux-x86_64 1.1.1 4.92 106.59 111.51 OK
r-release-linux-x86_64 1.1.1 3.78 106.61 110.39 OK
r-release-macos-arm64 1.1.1 OK
r-release-macos-x86_64 1.1.1 OK
r-release-windows-ix86+x86_64 1.1.1 8.00 129.00 137.00 OK
r-oldrel-macos-x86_64 1.1.1 OK
r-oldrel-windows-ix86+x86_64 1.1.1 10.00 130.00 140.00 OK

Check Details

Version: 1.1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'MVN'
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.1.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'MVN'
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.1.1
Check: examples
Result: ERROR
    Running examples in 'micompr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: assumptions.cmpoutput
    > ### Title: Get assumptions for parametric tests performed on output
    > ### comparisons
    > ### Aliases: assumptions.cmpoutput
    >
    > ### ** Examples
    >
    >
    > # Create a cmpoutput object from the provided datasets
    > cmp <- cmpoutput("All", 0.9, pphpc_ok$data[["All"]], pphpc_ok$obs_lvls)
    >
    > # Get the assumptions for the parametric tests performed in cmp
    > acmp <- assumptions(cmp)
    MANOVA assumptions require 'MVN' and 'biotools' packages.
    Error in `*tmp*`[[i]] : subscript out of bounds
    Calls: assumptions -> assumptions.cmpoutput
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.1.1
Check: tests
Result: ERROR
     Running 'testthat.R'
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > # Copyright (c) 2016 Nuno Fachada
     > # Distributed under the MIT License (http://opensource.org/licenses/MIT)
     >
     > library(testthat)
     >
     > test_check("micompr")
     Loading required package: micompr
     [ FAIL 2 | WARN 72 | SKIP 0 | PASS 291 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_cmpoutput.R:214:3): assumptions.cmpoutput creates the correct object ──
     <subscriptOutOfBoundsError/error/condition>
     Error in ``*tmp*`[[i]]`: subscript out of bounds
     Backtrace:
     █
     1. ├─micompr::assumptions(cmp) test_cmpoutput.R:214:2
     2. └─micompr:::assumptions.cmpoutput(cmp)
     ── Error (test_micomp.R:281:3): micomp assumptions have the correct properties ──
     <subscriptOutOfBoundsError/error/condition>
     Error in ``*tmp*`[[i]]`: subscript out of bounds
     Backtrace:
     █
     1. ├─micompr::assumptions(mic1a) test_micomp.R:281:2
     2. └─micompr:::assumptions.micomp(mic1a)
     3. └─base::lapply(obj, function(x) assumptions(x))
     4. └─micompr:::FUN(X[[i]], ...)
     5. ├─micompr::assumptions(x)
     6. └─micompr:::assumptions.cmpoutput(x)
    
     [ FAIL 2 | WARN 72 | SKIP 0 | PASS 291 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'paper.Rnw' using knitr
    Quitting from lines 341-342 (paper.Rnw)
    Error: processing vignette 'paper.Rnw' failed with diagnostics:
    subscript out of bounds
    --- failed re-building 'paper.Rnw'
    
    --- re-building 'tolatex-examples.Rnw' using knitr
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
     cannot compute exact p-value with ties
    --- finished re-building 'tolatex-examples.Rnw'
    
    SUMMARY: processing the following file failed:
     'paper.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK