CeRNASeek: Identification and Analysis of ceRNA Regulation
Provides several functions to identify and analyse miRNA sponge, including
popular methods for identifying miRNA sponge interactions, two types
of global ceRNA regulation prediction methods and four types of context-specific
prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based
on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data,
respectively. In addition, For predictive ceRNA relationship pairs, this package
provides several downstream analysis algorithms, including regulatory network
analysis and functional annotation analysis, as well as survival prognosis analysis
based on expression of ceRNA ternary pair.
||R (≥ 3.1.0)
||gtools , igraph, survival, parallel
||Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
||Mengying Zhang <zhangmengying at hrbmu.edu.cn>
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