CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

Version: 3.0
Depends: R (≥ 3.5.0)
Imports: checkmate (≥ 2.0.0), DBI (≥ 1.1.0), dplyr (≥ 1.1.0), magrittr (≥ 2.0.0), omopgenerics (≥ 0.2.0), rlang (≥ 1.0.0), glue (≥ 1.5.0), stringr (≥ 1.4.0), tidyselect (≥ 1.2.0), tidyr (≥ 1.2.0), cli (≥ 3.1.0), purrr, lubridate, PatientProfiles (≥ 1.0.0), RJSONIO, vctrs, visOmopResults (≥ 0.3.0), lifecycle
Suggests: covr, duckdb, CDMConnector (≥ 1.3.0), knitr, rmarkdown, testthat (≥ 3.0.0), RPostgres, odbc, spelling, tibble, gt, flextable
Published: 2024-05-31
DOI: 10.32614/CRAN.package.CodelistGenerator
Author: Edward Burn ORCID iD [aut, cre], Marti Catala ORCID iD [ctb], Xihang Chen ORCID iD [ctb]
Maintainer: Edward Burn <edward.burn at>
License: Apache License (≥ 2)
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: CodelistGenerator results


Reference manual: CodelistGenerator.pdf
Vignettes: 01_Introduction_to_CodelistGenerator


Package source: CodelistGenerator_3.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): CodelistGenerator_3.0.tgz, r-oldrel (arm64): CodelistGenerator_3.0.tgz, r-release (x86_64): CodelistGenerator_3.0.tgz, r-oldrel (x86_64): CodelistGenerator_3.0.tgz
Old sources: CodelistGenerator archive

Reverse dependencies:

Reverse imports: CohortSymmetry
Reverse suggests: CohortCharacteristics, CohortConstructor, CohortSurvival, DrugUtilisation, PatientProfiles


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