Hapi: Inference of Chromosome-Length Haplotypes Using Genomic Data of
Single Gamete Cells
Inference of chromosome-length haplotypes using a few haploid
gametes of an individual. The gamete genotype data may be generated from various platforms
including genotyping arrays and sequencing even with low-coverage. Hapi simply takes
genotype data of known hetSNPs in single gamete cells as input and report the high-resolution
haplotypes as well as confidence of each phased hetSNPs. The package also includes a module
allowing downstream analyses and visualization of identified crossovers in the gametes.
||R (≥ 3.4.0)
Sergio Pietro Ferrante,
Mikeal L. Roose,
||Ruidong Li <rli012 at ucr.edu>
Please use the canonical form
to link to this page.