PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation

The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>). A dataset 'think_barley.rda' is included for reference and examples.

Version: 1.3.1
Depends: R (≥ 3.5.0)
Imports: BGLR, qtl, rrBLUP, stats, utils, methods, parallel
Suggests: knitr, rmarkdown
Published: 2024-01-29
DOI: 10.32614/CRAN.package.PopVar
Author: Tyler Tiede [aut], Jeffrey Neyhart ORCID iD [aut, ctb, cre], Mohsen Mohammadi ORCID iD [ctb], Kevin Smith ORCID iD [ctb]
Maintainer: Jeffrey Neyhart <neyhartje at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README NEWS
In views: Agriculture
CRAN checks: PopVar results


Reference manual: PopVar.pdf
Vignettes: Using 'PopVar'


Package source: PopVar_1.3.1.tar.gz
Windows binaries: r-devel: PopVar_1.3.1.zip, r-release: PopVar_1.3.1.zip, r-oldrel: PopVar_1.3.1.zip
macOS binaries: r-release (arm64): PopVar_1.3.1.tgz, r-oldrel (arm64): PopVar_1.3.1.tgz, r-release (x86_64): PopVar_1.3.1.tgz, r-oldrel (x86_64): PopVar_1.3.1.tgz
Old sources: PopVar archive


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