RClone: Partially Clonal Populations Analysis

R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, <http://wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation approach, Stenberg et al. 2003).

Version: 1.0.2
Depends: R (≥ 3.2.0), graphics, stats, grDevices, utils, datasets, methods
Suggests: knitr, pander, testthat
Published: 2016-06-06
Author: Sophie Arnaud-Haond [aut], Diane Bailleul [aut, cre], Solenn Stoeckel [ctb]
Maintainer: Diane Bailleul <diane.bailleul.pro at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
URL: https://github.com/dbailleul/RClone
NeedsCompilation: no
Materials: README
CRAN checks: RClone results

Downloads:

Reference manual: RClone.pdf
Vignettes: RClone part 2
RClone part 1
Package source: RClone_1.0.2.tar.gz
Windows binaries: r-devel: RClone_1.0.2.zip, r-devel-gcc8: RClone_1.0.2.zip, r-release: RClone_1.0.2.zip, r-oldrel: RClone_1.0.2.zip
OS X binaries: r-release: RClone_1.0.2.tgz, r-oldrel: RClone_1.0.2.tgz
Old sources: RClone archive

Reverse dependencies:

Reverse suggests: poppr

Linking:

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