RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies

Functions for phylogenetic analysis (Castiglione et al, 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.

Version: 2.5.0
Depends: R (≥ 3.6.0), emmeans (≥ 1.4.3)
Imports: ape, phytools, geiger, stats4, foreach, doParallel, parallel
Suggests: phangorn, rlist, scales, R.utils, cluster, RColorBrewer, nlme, car, smatr, picante, vegan, ddpcr, geomorph, rmarkdown, knitr, kableExtra, plotrix, pdftools, rgl, mvMORPH, ggplot2, qpdf, inflection, Rvcg, Morpho, evolqg, manipulate
Published: 2020-12-03
Author: Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco Carotenuto
Maintainer: Pasquale Raia <pasquale.raia at unina.it>
License: GPL-2
NeedsCompilation: no
Citation: RRphylo citation info
Materials: README
CRAN checks: RRphylo results

Downloads:

Reference manual: RRphylo.pdf
Vignettes: RRphylo
Tree-Manipulation
overfitRR
search.conv
search.shift
search.trend
swapONE
Package source: RRphylo_2.5.0.tar.gz
Windows binaries: r-devel: RRphylo_2.5.0.zip, r-release: RRphylo_2.5.0.zip, r-oldrel: RRphylo_2.4.11.zip
macOS binaries: r-release: RRphylo_2.4.11.tgz, r-oldrel: RRphylo_2.5.0.tgz
Old sources: RRphylo archive

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