WayFindR: Computing Graph Structures on WikiPathways

Converts pathways from 'WikiPathways' GPML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).

Version: 0.1.2
Depends: R (≥ 3.5)
Imports: graphics, utils, XML, igraph
Suggests: knitr, rmarkdown, Polychrome
Published: 2024-04-10
DOI: 10.32614/CRAN.package.WayFindR
Author: Kevin R. Coombes [aut, cre], Polina Bombina [aut]
Maintainer: Kevin R. Coombes <krc at silicovore.com>
License: Artistic-2.0
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
CRAN checks: WayFindR results


Reference manual: WayFindR.pdf
Vignettes: WayFindR: Creating Graph Structures From WikiPathways Files
WayFindR: Computing Graph Metrics on WikiPathways


Package source: WayFindR_0.1.2.tar.gz
Windows binaries: r-devel: WayFindR_0.1.2.zip, r-release: WayFindR_0.1.2.zip, r-oldrel: WayFindR_0.1.2.zip
macOS binaries: r-release (arm64): WayFindR_0.1.2.tgz, r-oldrel (arm64): WayFindR_0.1.2.tgz, r-release (x86_64): WayFindR_0.1.2.tgz, r-oldrel (x86_64): WayFindR_0.1.2.tgz


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