bcTSNE: Projected t-SNE for Batch Correction

Implements the projected t-SNE method for batch correction of high-dimensional data. Please see Aliverti et al. (2020) <doi:10.1093/bioinformatics/btaa189> for more information.

Version: 0.11.1
Imports: stats, RSpectra, utils, Rtsne, graphics, splatter
Suggests: data.table, batchelor, kBET, scater, knitr, lisi, harmony, dlfUtils, xtable
Published: 2021-12-01
Author: Dayne L Filer [aut, cre], Emanuele Aliverti [aut], Jeff Tilson [aut], Kirk C Wilhelmsen [aut], David B Dunson [aut]
Maintainer: Dayne L Filer <dayne.filer at gmail.com>
License: GPL-3
URL: https://github.com/emanuelealiverti/BC_tSNE
NeedsCompilation: yes
SystemRequirements: GNU make
Additional_repositories: https://daynefiler.github.io/drat
Citation: bcTSNE citation info
CRAN checks: bcTSNE results

Documentation:

Reference manual: bcTSNE.pdf
Vignettes: Simulation Experiment

Downloads:

Package source: bcTSNE_0.11.1.tar.gz
Windows binaries: r-devel: bcTSNE_0.10.0.zip, r-devel-UCRT: bcTSNE_0.10.0.zip, r-release: bcTSNE_0.10.0.zip, r-oldrel: bcTSNE_0.10.0.zip
macOS binaries: r-release (arm64): bcTSNE_0.10.0.tgz, r-release (x86_64): bcTSNE_0.10.0.tgz, r-oldrel: bcTSNE_0.10.0.tgz
Old sources: bcTSNE archive

Linking:

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