pedprobr: Probability Computations on Pedigrees

An implementation of the Elston-Stewart algorithm for calculating pedigree likelihoods given genetic marker data (Elston and Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is extended to allow inbred founders. 'pedprobr' is part of the 'ped suite', a collection of packages for pedigree analysis in R. In particular, 'pedprobr' depends on 'pedtools' for pedigree manipulations and 'pedmut' for mutation modelling. For more information, see 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).

Version: 0.6.1
Depends: pedtools (≥ 1.1.0), R (≥ 4.1.0)
Imports: pedmut
Suggests: testthat
Published: 2022-01-05
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
BugReports: https://github.com/magnusdv/pedprobr/issues
License: GPL-3
URL: https://github.com/magnusdv/pedprobr
NeedsCompilation: no
SystemRequirements: MERLIN (https://csg.sph.umich.edu/abecasis/merlin/) for calculations involving multiple linked markers.
Language: en-GB
Materials: README NEWS
CRAN checks: pedprobr results

Documentation:

Reference manual: pedprobr.pdf

Downloads:

Package source: pedprobr_0.6.1.tar.gz
Windows binaries: r-devel: pedprobr_0.6.1.zip, r-release: pedprobr_0.6.1.zip, r-oldrel: pedprobr_0.5.0.zip
macOS binaries: r-release (arm64): pedprobr_0.6.1.tgz, r-release (x86_64): pedprobr_0.6.1.tgz, r-oldrel: pedprobr_0.5.0.tgz
Old sources: pedprobr archive

Reverse dependencies:

Reverse depends: pedsuite
Reverse imports: dvir, forrel, paramlink2, pedbuildr, segregatr

Linking:

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