polymapR: Linkage Analysis in Outcrossing Polyploids

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0, both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (submitted, 2020).

Version: 1.1.0
Depends: R (≥ 3.5.0)
Imports: doParallel, foreach, igraph, knitr, MDSMap
Suggests: ggplot2, hexbin, Hmisc, RColorBrewer, reshape2, rmarkdown
Published: 2020-07-15
Author: Peter Bourke [aut, cre], Geert van Geest [aut], Roeland Voorrips [ctb], Yanlin Liao [ctb]
Maintainer: Peter Bourke <pbourkey at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
CRAN checks: polymapR results

Downloads:

Reference manual: polymapR.pdf
Vignettes: Using genotype probabilities in polymapR
How to use polymapR
Package source: polymapR_1.1.0.tar.gz
Windows binaries: r-devel: polymapR_1.1.0.zip, r-release: polymapR_1.1.0.zip, r-oldrel: polymapR_1.1.0.zip
macOS binaries: r-release: polymapR_1.1.0.tgz, r-oldrel: polymapR_1.1.0.tgz
Old sources: polymapR archive

Reverse dependencies:

Reverse suggests: mappoly

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