qtl2fst: Database Storage of Genotype Probabilities for QTL Mapping

Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

Version: 0.26
Depends: R (≥ 3.1.0)
Imports: fst, qtl2 (≥ 0.24)
Suggests: testthat, knitr, rmarkdown
Published: 2021-10-07
Author: Karl W Broman ORCID iD [aut, cre], Brian S Yandell ORCID iD [aut], Petr Simecek ORCID iD [aut]
Maintainer: Karl W Broman <broman at wisc.edu>
License: GPL-3
URL: https://github.com/rqtl/qtl2fst
NeedsCompilation: no
Materials: README NEWS
CRAN checks: qtl2fst results

Documentation:

Reference manual: qtl2fst.pdf
Vignettes: qtl2fst user guide

Downloads:

Package source: qtl2fst_0.26.tar.gz
Windows binaries: r-devel: qtl2fst_0.26.zip, r-release: qtl2fst_0.26.zip, r-oldrel: qtl2fst_0.26.zip
macOS binaries: r-release (arm64): qtl2fst_0.26.tgz, r-release (x86_64): qtl2fst_0.26.tgz, r-oldrel: qtl2fst_0.26.tgz
Old sources: qtl2fst archive

Reverse dependencies:

Reverse imports: qtl2pattern

Linking:

Please use the canonical form https://CRAN.R-project.org/package=qtl2fst to link to this page.