revengc: An R package to reverse engineer decoupled and censored data

Decoupled (e.g. separate averages) and censored (e.g. > 100 species) variables are continually reported by many well-established organizations (e.g. World Health Organization (WHO), Centers for Disease Control and Prevention (CDC), World Bank, and various national censuses). The challenge therefore is to infer what the original data could have been given summarized information. We present an R package that reverse engineers decoupled and/or censored data with two main functions. The function estimates the average and dispersion parameter of a censored univariate frequency table. The rec function reverse engineers summarized data into an uncensored bivariate table of probabilities.

It is highly recommended for a user to read the vignettes for more information about the methodology of both functions.

Getting Started

You can install the latest development version from github with


or the the latest release version from CRAN with


Usage has the following format

where a description of the argument directly below

rec() has the following format where a description of each argument is found below

rec(X, Y, Xlowerbound, Xupperbound, Ylowerbound, Yupperbound, 
    seed.matrix, seed.estimation.method)

Table format

The univariate frequency table, which can be a data.frame or matrix class, must have two columns and n number of rows. The categories must be in the first column with the frequencies or probabilities in the second column. Row names should never be placed in this table (the default row names should always be 1:n). Column names can be any character string. The only symbols accepted for censored data are listed below. Note, less than or equal to (<= and LE) is not equivalent to less than (< and L) and greater than or equal to (>=, +, and GE) is not equivalent to greater than (> and G). Also, calculations use closed intervals.

The formatted example below is made with the following code.

univariatetable<-cbind(as.character(c("<=6", "7-12", "13-19", "20+")), c(11800,57100,14800,3900))
<=6 11800
7-12 57100
13-19 14800
20+ 3900

The contingency table has restrictions. The censored symbols should follow the requirements listed above. The table’s class can be a data.frame or a matrix. The column names should be the Y category values. Row names should never be placed in this table, the default should always be 1:n. The first column should be the X category values. The inside of the table are X * Y cross tabulation, which are either nonnegative frequencies or probabilities if seed.estimation.method is “ipfp” or strictly positive when method is “ml”, “lsq” or “chi2”. The row and column marginal totals corresponding to their X and Y category values need to be placed in this table. The top left, top right, and bottom left corners of the table should be NA or blank. The bottom right corner can be a total cross tabulation sum value, NA, or blank. The formatted example below is made with the following code.

contingencytable<-matrix(c(18, 13, 7, 19, 8, 5, 8, 12, 10), nrow = 3, ncol = 3)
  contingencytable<-cbind(contingencytable, rowmarginal)
  contingencytable<-rbind(contingencytable, colmarginal)
  contingencytable<-data.frame(c("<5", "5I9", "G9", NA), contingencytable)
  colnames(contingencytable)<-c(NA,"<=19","20-30",">=31", NA)
NA <=19 20-30 >=31 NA
<5 18 19 8 45
5I9 13 8 12 33
G9 7 5 10 22
NA 38 32 30 100

Examples of Applying functions to Census Data


A Nepal Living Standards Survey [1] provides a censored table and average for urban household size. Using the censored table, the function calculates a close approximation to the provided average household size (4.4 people).

# revengc has the Nepal houshold table preloaded as univariatetable.csv = univariatetable.csv)


In 2010, the Population Census Data - Statistics Indonesia provided over 60 censored contingency tables containing Floor Area of Dwelling Unit (square meter) by Household Member Size. The tables are separated by province, urban, and rural. Here we use the household size by area contingency table for Indonesia’s rural Aceh Province to show the multiple coding steps and functions implemented inside rec. This allows the user to see a methodology workflow in code form. The final uncensored household size by area estimated probability table, which implemented the “ipfp” method and default seed matrix, has rows ranging from 1 (Xlowerbound) to 15 (Xupperbound) people and columns ranging from 10 (Ylowerbound) to 310 (Yupperbound) square meters.

# data = Indonesia 's rural Aceh Province censored contingency table
# preloaded as 'contingencytable.csv'

# provided upper and lower bound values for table
# X=row and Y=column

# table of row marginals provides average and dispersion for x
# table of column marginals provides average and dispersion for y

# create uncensored row and column ranges   

# new uncensored row marginal table = truncated negative binomial distribution
uncensored.row.margin<-dtrunc(rowrange, mu=x$Average, size = x$Dispersion, 
  a = Xlowerbound-1, b = Xupperbound, spec = "nbinom")
# new uncensored column margin table = truncated negative binomial distribution
uncensored.column.margin<-dtrunc(colrange, mu=y$Average, size = y$Dispersion,
  a = Ylowerbound-1, b = Yupperbound, spec = "nbinom")

# sum of truncated distributions equal 1
# margins need to be equal for mipfp 

# create seed of probabilities (rec default)
seed.output<-seedmatrix(contingencytable.csv, Xlowerbound, 
  Xupperbound, Ylowerbound, Yupperbound)$Probabilities

# run mipfp
# store the new margins in a list<-list(uncensored.row.margin, uncensored.column.margin)
# list of dimensions of each marginal constrain
# calling the estimated function
## seed has to be in array format for mipfp package
## ipfp is the selected seed.estimation.method
  length(Ylowerbound:Yupperbound))), tgt.list,, method="ipfp")$x.hat

# filling in names of updated seed  

# reweight estimates to known censored interior cells 
final1<-reweight.contingencytable(observed.table = contingencytable.csv, 
  estimated.table = final1)

# final result is probabilities

# rec function outputs the same table
# default of rec seed.estimation.method is ipfp
# default of rec seed.matrix is the output of the seedmatrix() function
final2<-rec(X= contingencytable.csv,
  Xlowerbound = 1,
  Xupperbound = 15,
  Ylowerbound = 10,
  Yupperbound = 310)

# check that both data.frame results have same values
all(final1 == final2$Probabilities)

[1] National Planning Commissions Secretariat, Government of Nepal. (2011). Nepal Living Standards Survey. Retrieved from:

[2] Population Census Data - Statistics Indonesia. (2010). Household by Floor Area of Dwelling Unit and Households Member Size. Retrieved from: